import java.awt.Canvas;
import java.awt.event.*;
import java.awt.geom.*;
import java.awt.BorderLayout;
import java.awt.Color;
import java.awt.Component;
import java.awt.Container;
import java.awt.Cursor;
import java.awt.Dimension;
import java.awt.Frame;
import java.awt.Graphics;
import java.awt.Graphics2D;
import java.awt.RenderingHints;
import java.io.BufferedReader;
import java.io.File;
import java.io.FileReader;
import java.io.FileNotFoundException;
import java.io.IOException;
import java.util.HashSet;
import java.util.Hashtable;
import java.util.Iterator;
import java.util.Set;
import java.util.StringTokenizer;
import java.util.TreeMap;
import java.util.TreeSet;
import java.util.Vector;

import javax.swing.AbstractAction;
import javax.swing.Box;

import javax.swing.JButton;
import javax.swing.JComponent;
import javax.swing.JDialog;
import javax.swing.JFrame;
import javax.swing.JLabel;
import javax.swing.JList;
import javax.swing.JMenu;
import javax.swing.JMenuItem;
import javax.swing.JMenuBar;
import javax.swing.JLabel;
import javax.swing.JOptionPane;
import javax.swing.JPanel;
import javax.swing.JScrollPane;
import javax.swing.ProgressMonitor;
import javax.swing.KeyStroke;
import javax.swing.ListSelectionModel;
import javax.swing.UIManager;

//import ChooseStringDialog;       // dialog box for choosing from a list

/**
 * BeadPlot - a tool for visual comparison of TREC result sets
 * <p>
 * This class implements a tool for displaying a number of ranked result,
 * sets for a given TREC topic. Each result is represented as a string of 
 * beads (colored rectangles) laid out horizontally with the highest ranked 
 * document represented by the leftmost bead in the strand.
 * <p>
 * Each result is represented as a string of beads (colored rectangles) 
 * laid out horizontally with the highest ranked document represented by 
 * the leftmost bead in the strand.  One of the results is designated as 
 * the reference result and colors are assigned in spectral sequence (ROYGBIV)
 * to its documents' beads if they fall within a specified range (the 
 * reference range). Other documents in the reference result are represented 
 * by gray rectangles. If a document from the reference result appears in 
 * another result, it will be represented the same in there as in the 
 * reference result. Documents not retrieved in the reference result are not 
 * represented anywhere.
 * 
 * @version 0.1 alpha
 *
 * @author
 * This software was produced by NIST, an agency of the
 * U.S. government, and by statute is not subject to copyright in the
 * United States.  Recipients of this software assume all
 * responsibilities associated with its operation, modification and
 * maintenance.
 */
public class BeadPlot extends JFrame {

  /** Top frame */
  private static JFrame f = null; 

  private static JPanel plot = null;

  private static Component contents = null;

  /** Dialog box for topic choice */
  private static ChooseStringDialog topicDialog= null;

  private static JMenu viewMenu = null;

  /** Dialog box for result set files choice */
  private static ChooseStringDialog resultFilesDialog= null;

  /** Dialog box for choosing the reference run id */
  private static ChooseStringDialog runIdDialog= null;



  /** Topic for which data is to be displayed */
  private static String topicForDisplay = null;

  /** Run-id of the current reference result */
  private static String refRunId = null;

  /** The reference result  */
  private static DocData[] refResult = null;



  /** File containing qrels */
  private static String qrelsFileName = null;

  /** Directory containing results */
  private static String resultsDirName = null;



  /** Hashed qrels (key = topic+docid) only rel docs included */
  private static HashSet qrelsRelsHash = new HashSet();

  /** Hashed topics from qrels */
  private static TreeSet qrelsTopics = new TreeSet();

  /** Hashed run-ids from results */
  private static TreeSet runIdHash = new TreeSet();

  private static int oldNumRunIds = 0;

  /** DocData objects from the result sets hashed by docid */
  private static Hashtable docsHash = new Hashtable();

  /*
   *  resultsByTopic
   *  --------------  
   *   Hashtable
   *   topic1 ------>  results
   *   topic2          ---------------
   *   ...               Hashtable
   *   topicT            runid1 ------> resultSet
   *                     runid2         --------- 
   *                     ...             String[1000] of doc ids
   *                     runidR
   */

  /** results hashtables hashed by topic */
  private static Hashtable resultsByTopic = new Hashtable();

  /** Result set arrays hashed by runid */
  private static TreeMap results = new TreeMap();


  // Structures directly supporting the plot

  /** Run-ids being displayed */
  static String[] runIdsForDisplay = null;

  /** Run-ids with data for current topic */
  static int runsWithData = 0;

  /** Result sets being displayed - corresponding to runIdsForDisplay */
  static DocData[][]resultSetsForDisplay = null;

  /** DocData for document to be highlighted */
  static DocData highlightDocData = null;

  /** Status of relevance filter for use in title */
  static String filterStatus = "All";

  /** Are we filtering by relevance? */
  static boolean filteringByRelevance = false;

  /** Relevance value required if filtering documents by relevance*/
  static boolean requiredRelevance = false;

  static final int numColors = 4;
  static Color colors1[] = new Color[numColors*numColors];
  static Color colors2[] = new Color[numColors*numColors];

  /** */
  private static String topics[] = null;

  /** */
  private static String runIds[] = null;

  /** */
  private static String resultFileNames[] = null;

  private static int progressVal = 0;

  private Integer selectedDisplayRangeStartValue = new Integer(0);
  private Integer selectedRefRangeStartValue = new Integer(1);
  private Integer selectedRefRangeSizeValue = new Integer(50);

  final static int MAX_RESULT_SIZE = 2000;
        static int MIN_DISPLAY_INDEX = 0;
        static int MIN_REF_RANK = 1;
        static int MAX_REF_RANK = 50;
  final static int MAX_DISPLAY_RANK = 100;
  final static int NUM_DISPLAYED_RANKS = 100;
  final static int PREFERRED_PLOT_WIDTH = 800;

  final static int VGAP = 2;
  final static int BEAD_HEIGHTH = 8;
  final static int HGAP = 3;
  final static int BEAD_WIDTH = 5;
  final static int RUN_ID_WIDTH = 25;

  private Cursor waitCursor = Cursor.getPredefinedCursor(Cursor.WAIT_CURSOR);
  private Cursor defaultCursor = Cursor.getPredefinedCursor(Cursor.DEFAULT_CURSOR);
  
  /**
   * Static initializer
   */
  static {
    makeSecondaryColors();
  }


  
  /**
   * DocData
   * 
   * This inner class represents a document from a result set
   */
  public class DocData {
    /** The document id */
    String docId;

    int rank = 0;

    /** The red component of display color assigned to document */
    float r1 = (float)0.75; // lightGray
    /** The green component of display color assigned to document */
    float g1 = (float)0.75;
    /** The blue component of display color assigned to document */
    float b1 = (float)0.75;

    /** The second color assigned to document */
    Color color2 = Color.lightGray;

    /** The third color assigned to document */
    Color color3 = Color.lightGray;

    public DocData (String id, int rank) {
      docId = id;
      this.rank = rank;
    }

    public void setColor1(float red, float green, float blue) {
      r1 = red;
      g1 = green;
      b1 = blue;
    }

    public void setColor2(Color c) {
      color2 = c;
    }

    public void setColor3(Color c) {
      color3 = c;
    }

    public void setRank(int rank){
      this.rank = rank;
    }

    public Color getColor1(){
      return new Color(r1,g1,b1);
    }

    public Color getColor2(){
      return color2;
    }

    public Color getColor3(){
      return color3;
    }

    public String getDocId(){
      return docId;
    }

    public int getRank(){
      return rank;
    }

  }



  /**
   * ResultSet
   *
   * This inner class represents a named result set
   */
  public class ResultSet {
    /** The result set name (e.g., the run id) */
    String name; 

    /** The documents in this result; index 0 -> most highly ranked */
    DocData result[];

    public ResultSet(String name, int size) {
      this.name = name;
      result = new DocData[size];
    }
  }


  /**
   * Reads result sets in a separate thread since it may take a while
   */
  public class ResultSetReader extends Thread {

  String[] resultFileNames = null;
  ProgressMonitor progressMon = null;

  ResultSetReader(String[] results) {
    resultFileNames = results;
  }
    
  public void run() {

    int numFiles = resultFileNames.length;

    progressMon = 
      new ProgressMonitor(f, 
			  "Loading "+numFiles+" result files", 
			  resultFileNames[0],
			  1, 
			  numFiles);
    progressMon.setMillisToDecideToPopup(0);
    progressMon.setMillisToPopup(0);
    progressMon.setProgress(0);

    for (int i=0; i<numFiles; i++)
      {
      progressMon.setNote(resultFileNames[i]);
      readResults(resultFileNames[i]);
      progressMon.setProgress(i);
      }

    progressMon.setProgress(numFiles*1000); //indicate completion; cause close

    Iterator iterator = runIdHash.iterator();
    int numRunIds = runIdHash.size();
    runIds = new String[numRunIds];
    for (int i = 0; i < numRunIds; i++)
      {
      runIds[i] = (String)iterator.next();
      }

    refRunId = runIds[0]; // default to the first run-id

    if (topicForDisplay != null)
      viewMenu.setEnabled(true);

    int newMaxY = 2*runIds.length*BEAD_HEIGHTH*VGAP+BEAD_HEIGHTH;
    Dimension newDim = new Dimension(PREFERRED_PLOT_WIDTH,newMaxY);
    plot.setPreferredSize(newDim);
    plot.revalidate();
    f.pack();

    if (recalculateDisplay() == 0)
      f.paintAll(f.getGraphics());

    contents.setCursor(defaultCursor);
  }

  /**
   * Reads a result set file in and stores the contents
   * @param fileName results file name string
   */
  public void readResults(String resultFileName) {

    DocData[] resultSet = null;
    DocData docData = null;
    int docDataIndex = 0;
    String curTopic = "";

    BufferedReader reader = null;
      
    try { reader = new BufferedReader(new FileReader(resultFileName));}
    catch (FileNotFoundException e) {
      System.out.println("Beadplot.readResults: Unable to find results file -> "
			 + resultFileName + "-" +e);
      return; 
    }

    String line = "";
    StringTokenizer tokenizer = null;

    String topic = "";
    String junk  = "";
    String docid = "";
    String runid = "";

    boolean gotRunId = false;

    try { line = reader.readLine();}
    catch (FileNotFoundException e) {
      System.out.println("Beadplot.readResults: Unable to read results file -> "
			 + resultFileName + "-" +e);
      return; 
    }
    catch (IOException e) {
      System.out.println("Beadplot.readResults: Unable to read results file -> "
			 + resultFileName+ "-" +e);
      return; 
    }

    while (line != null)  // for each line in the result file
      {
      tokenizer =  new StringTokenizer(line);

      while (tokenizer.hasMoreTokens())  // for each token in the line
	{
	topic = Integer.toString(Integer.parseInt(tokenizer.nextToken()),10);
	int len = topic.length();
	if (len == 3)
	    {
		topic = "0"+topic;
	    }
	else if (len == 2)
	    {
		topic = "00"+topic;
	    }	
	else if (len == 1)
	    {
		topic = "000"+topic;
	    }	

	junk  = tokenizer.nextToken();
	docid = tokenizer.nextToken();
	junk  = tokenizer.nextToken();
	junk  = tokenizer.nextToken();
	runid = tokenizer.nextToken();
	//System.out.println(topic + " " + docid + " " + runid);

	if (!gotRunId) 
	  {
	  runIdHash.add(runid);
	  gotRunId = true;
	  }

	docData = (DocData) docsHash.get(docid);
	if (docData == null)
	  {
	  docData = new DocData(docid,9999);
	  docsHash.put(docid,docData);
	  }
	  
	/*-------------------------------------------------------------*
	 * When the topic changes:
	 *-------------------------------------------------------------*/
	if (curTopic.compareTo(topic) != 0)
	  {
	  // Set the results vector - get the existing one for this
	  // topic or create a new one
	  results = (TreeMap) resultsByTopic.get(topic);
	  if (results == null)
	    {
	    results = new TreeMap();
	    resultsByTopic.put(topic,results);
	    System.out.println("Adding result for topic "+topic);
	    }

	  resultSet = new DocData[MAX_RESULT_SIZE]; // create new result set
	  docDataIndex = 0;
	  results.put(runid,resultSet); // add result to cur. results table

	  curTopic = topic;
	  }

	resultSet[docDataIndex++] = docData;
	}

      try { line = reader.readLine();}
      catch (FileNotFoundException e) 
	{
	System.out.println("Beadplot.readResults: Unable to "+
			   "read results file -> " +
			   resultFileName + "-" +e);
	return; 
	}
      catch (IOException e) 
	{
	System.out.println("Beadplot.readResults: Unable to "+
			   "read results file -> " +
			   resultFileName+ "-" +e);
	return; 
	}

      } // end while (line != null)
    
  }

  }



  /**
   * Plot 
   *
   * This inner class models the beadplot itself.
   */
  private class Plot extends JPanel {

    /**------------------------------------------------------------------
     * Paints the beadplot
     * @param graphics a graphics context to work with
     */
    public void paint(Graphics graphics) {

      super.paint(graphics);
      System.out.println("Painting");

      Graphics2D g2 = (Graphics2D)graphics; 
      g2.setRenderingHint(RenderingHints.KEY_ANTIALIASING, 
      		  RenderingHints.VALUE_ANTIALIAS_ON);
      g2.setRenderingHint(RenderingHints.KEY_COLOR_RENDERING, 
      		  RenderingHints.VALUE_COLOR_RENDER_QUALITY);
      g2.setRenderingHint(RenderingHints.KEY_DITHERING, 
      		  RenderingHints.VALUE_DITHER_ENABLE);
      g2.setRenderingHint(RenderingHints.KEY_RENDERING, 
      		  RenderingHints.VALUE_RENDER_QUALITY);
 
      if (resultSetsForDisplay != null)
	{
	int maxDisplayedRank = MIN_DISPLAY_INDEX+1 + NUM_DISPLAYED_RANKS-1;
	if (maxDisplayedRank >= MAX_RESULT_SIZE)
	  maxDisplayedRank = MAX_RESULT_SIZE;

	if (highlightDocData == null)
	  f.setTitle("BeadPlot:     " +filterStatus +" reference documents "+
		     "     Ranks " + (MIN_DISPLAY_INDEX+1) + "->" +
		     maxDisplayedRank + 
		     "     Topic " + topicForDisplay);
	else
	  f.setTitle("BeadPlot:     " +filterStatus +" reference documents "+
		     "     Ranks " + (MIN_DISPLAY_INDEX+1) + "->" +
		     maxDisplayedRank + 
                     "     Topic "+topicForDisplay+
		     "     Highlighting document "+highlightDocData.getDocId());

        int numResults = resultSetsForDisplay.length;
      
	for (int row=0; row < numResults; row++)
	  {

	  if (runIdsForDisplay[row] == null)
	      continue;		  

	  // ----------- Set run-id color and draw it
	  if (runIdsForDisplay[row].compareTo(refRunId) == 0)
	    g2.setColor(Color.blue); // highlight ref run-id
	  else
	    g2.setColor(Color.black);
	  g2.drawString(runIdsForDisplay[row],
			1,
			((int)(row*2*BEAD_HEIGHTH*VGAP+BEAD_HEIGHTH+5)));	

	    
	  Color c = null;
	  DocData doc = null;
	  // ----------- Draw beads
	  if (highlightDocData == null)
	    {
	    for (int rank=0; rank < NUM_DISPLAYED_RANKS; rank++)
	      {
	      doc = resultSetsForDisplay[row][rank+MIN_DISPLAY_INDEX];

	      if (doc == null) 
		continue;

	      if ( filteringByRelevance && 
		   (requiredRelevance != 
		    qrelsRelsHash.contains(topicForDisplay+doc.getDocId())) )
		continue;

	      g2.setColor(doc.getColor1());
	      g2.fillRect( ((int)((RUN_ID_WIDTH+rank-1)*(BEAD_WIDTH+HGAP))),
			   ((int)(row*2*BEAD_HEIGHTH*VGAP+BEAD_HEIGHTH)),
			   (int)BEAD_WIDTH,
			   (int)BEAD_HEIGHTH);
	    
	      g2.setColor(doc.getColor2());
	      g2.fillRect( ((int)((RUN_ID_WIDTH+rank-1)*(BEAD_WIDTH+HGAP))),
			   ((int)(row*2*BEAD_HEIGHTH*VGAP+2.33*BEAD_HEIGHTH)),
			   (int)BEAD_WIDTH,
			   (int)BEAD_HEIGHTH/3);
	      g2.setColor(doc.getColor3());
	      g2.fillRect( ((int)((RUN_ID_WIDTH+rank-1)*(BEAD_WIDTH+HGAP))),
			   ((int)(row*2*BEAD_HEIGHTH*VGAP+2.66*BEAD_HEIGHTH)),
			   (int)BEAD_WIDTH,
			   (int)BEAD_HEIGHTH/3);
	      }
	    }
	  else
	    {
	    for (int rank=0; rank < NUM_DISPLAYED_RANKS; rank++)
	      {
	      doc = resultSetsForDisplay[row][rank+MIN_DISPLAY_INDEX];

	      if (doc == null)
		continue;

	      if ( filteringByRelevance && 
		   (requiredRelevance != 
		    qrelsRelsHash.contains(topicForDisplay+doc.getDocId())))
		continue;

	      if (highlightDocData==doc)
		{
		//g2.setColor(doc.getColor1());
		g2.setColor(Color.white);
	        g2.fillRect((int)((RUN_ID_WIDTH+rank-1)*(BEAD_WIDTH+HGAP)),
			      (int)(row*2*BEAD_HEIGHTH*VGAP),
			      (int)BEAD_WIDTH,
			      (int)BEAD_HEIGHTH*3);
		}
	      else
		{
	        g2.setColor(doc.getColor1());
		g2.fillRect( ((int)((RUN_ID_WIDTH+rank-1)*(BEAD_WIDTH+HGAP))),
			     ((int)(row*2*BEAD_HEIGHTH*VGAP+BEAD_HEIGHTH)),
			     (int)BEAD_WIDTH,
			     (int)BEAD_HEIGHTH);
	    
		g2.setColor(doc.getColor2());
		g2.fillRect( ((int)((RUN_ID_WIDTH+rank-1)*(BEAD_WIDTH+HGAP))),
			     ((int)(row*2*BEAD_HEIGHTH*VGAP+2.33*BEAD_HEIGHTH)),
			     (int)BEAD_WIDTH,
			     (int)BEAD_HEIGHTH/3);
		g2.setColor(doc.getColor3());
		g2.fillRect( ((int)((RUN_ID_WIDTH+rank-1)*(BEAD_WIDTH+HGAP))),
			     ((int)(row*2*BEAD_HEIGHTH*VGAP+2.66*BEAD_HEIGHTH)),
			     (int)BEAD_WIDTH,
			     (int)BEAD_HEIGHTH/3);
		}

	      }
	      
	    }

	  }

	} // end if (resultSetsForDisplay != null)
      else
	{
	f.setTitle("BeadPlot");
	}
      
    } // end paint

  } //end Plot



  public static void makeSecondaryColors() {

    Color[] colors = new Color[numColors];
    int colorIndex = 0;
    colors[0] = Color.red;
    colors[1] = Color.yellow;
    colors[2] = Color.blue;
    colors[3] = Color.green;
    //colors[4] = Color.black;
    //colors[5] = Color.white;

    colors1 = new Color[numColors*numColors];
    colors2 = new Color[numColors*numColors];
    int c = 0;
    int i = 0;
    int j = 0;
    int x = 0;
    int y = 0;

    for (i=0; i<numColors; i++)
      {
      j = i;
      colors1[c]  = colors[i];
      colors2[c++]= colors[j];	
      x = i-1;
      y = j+1;
      while(x>=0 && x<numColors && y>=0 && y<numColors)
	{
	colors1[c]=colors[x];
	colors2[c++]=colors[y];
	x--;
	y++;
	}
      x = i+1;
      y = j-1;
      while(x>=0 && x<numColors && y>=0 && y<numColors)
	{
	colors1[c]=colors[x];
	colors2[c++]=colors[y];
	x++;
	y--;
	}

      }
    for (i=1; i<numColors; i++)
      {
      j = i-1;
      colors1[c]  = colors[i];
      colors2[c++]= colors[j];
      x = i-1;
      y = j+1;
      while(x>=0 && x<numColors && y>=0 && y<numColors)
	{
	colors1[c]=colors[x];
	colors2[c++]=colors[y];
	x--;
	y++;
	}
      x = i+1;
      y = j-1;
      while(x>=0 && x<numColors && y>=0 && y<numColors)
	{
	colors1[c]=colors[x];
	colors2[c++]=colors[y];
	x++;
	y--;
	}
      }
}



  /**
   * Moves result set at index in results to the bottom and shift others
   * up where needed.
   */
  public static void prioritizeResultSet(DocData[][] results, 
					 String[] runIds, int index) {
      //int maxIndex = results.length - 1;
      int maxIndex = runsWithData-1;
    if (index == maxIndex)
      return;
    else
      {
      DocData[] theResult = results[index];
      String theRunId = runIds[index];
      for (int moveFromIndex=index+1; moveFromIndex<=maxIndex; moveFromIndex++)
        {
        results[moveFromIndex-1]=results[moveFromIndex];
        runIds[moveFromIndex-1]=runIds[moveFromIndex];
        }
      results[maxIndex]= theResult;
      runIds[maxIndex]= theRunId;
      }
  }


  public static int recalculateDisplay() {

    int i = 0;
    int colorCount=0;

    // if topicForDisplay is null, get for one
    if (topicForDisplay == null)
      {
      return(1);
      }

    // if refRunId if null, get for one
    if (refRunId == null)
      {
      return(2);
      }

    // if refResult is not null
    //   Step through it resetting the color of each document
      
    float refButNotColoredRGB = (float)0.60; // darkGray
    Color refButNotColoredColor = new Color(refButNotColoredRGB,
					    refButNotColoredRGB,
					    refButNotColoredRGB);
    float notInRefRGB = (float)0.75; // lightGray

    if (refResult != null)
      for (i=refResult.length-1; i>= 0; i--)
	{
	if (refResult[i]!=null)
	  {
	  refResult[i].setColor1(notInRefRGB,notInRefRGB,notInRefRGB);
	  refResult[i].setColor2(Color.lightGray);
	  refResult[i].setColor3(Color.lightGray);
	  }
	}

    // Use the topicForDisplay and the refRunId to get the new
    // reference result and assign it to refResult

    TreeMap results = (TreeMap)resultsByTopic.get(topicForDisplay);
    if (results == null)
	{
	      System.out.println("No results for topic "+topicForDisplay);
	}
    else
      {
      refResult = (DocData[])results.get(refRunId);
      if (refResult == null)
	  {
	      System.out.println("No results for "+refRunId+" and topic "+topicForDisplay);
	  }
      else
	{
	// Step though the reference result setting each document's
        // color based on its rank
	float docnum;
	float r,g,b;
	int maxRefIndex = MAX_REF_RANK-1;
	int minRefIndex = MIN_REF_RANK-1;
	float mrr1 = ((float)(maxRefIndex-minRefIndex))/(float)7;
	float mrr2 = 2*mrr1;
	float mrr3 = 3*mrr1;
	float mrr4 = 4*mrr1;
	float mrr5 = 5*mrr1;
	float mrr6 = 6*mrr1;
	int numResults = refResult.length;

	for (i=0; i<numResults; i++)
	  {
	  docnum = i-minRefIndex;
	  if (refResult[i]!=null)
	    {
	    if (i > maxRefIndex || i < minRefIndex)
	      { 
	      refResult[i].setColor1(refButNotColoredRGB,
				     refButNotColoredRGB,
				     refButNotColoredRGB);
	      refResult[i].setColor2(Color.lightGray);
	      refResult[i].setColor3(Color.lightGray);
	      //refResult[i].setColor2(refButNotColoredColor);
	      //refResult[i].setColor3(refButNotColoredColor);
	      refResult[i].setRank(9999);
	      }
	    else 
	      {
	      if (docnum <= mrr1) 
		{ r=docnum/mrr1;            g=0;                      b=0;}
	      else if (docnum <= mrr2) 
		{ r=1;                      g=(docnum-mrr1)/mrr1;     b=0;}
	      else if (docnum <= mrr3) 
		{ r=1-((docnum-mrr2)/mrr1); g=1;                      b=0;}
	      else if (docnum <= mrr4) 
		{ r=0;                      g=1;     b=(docnum-mrr3)/mrr1;}  
	      else if (docnum <= mrr5) 
		{ r=0;                      g=1-((docnum-mrr4)/mrr1); b=1;}
	      else if (docnum <= mrr6) 
		{ r=(docnum-mrr5)/mrr1;     g=0;                      b=1;}
	      else                 
		{ r=1;                      g=(docnum-mrr6)/mrr1;     b=1;
		if (g > 1) g = (float)1.0;} // sometimes g ends up a tiny
		                            // fraction over 1.0; not sure why
	      refResult[i].setColor1(r,g,b);
	      refResult[i].setColor2(colors1[colorCount]);
	      refResult[i].setColor3(colors2[colorCount]);
	      colorCount = (colorCount+1)%(numColors*numColors);
	      }
	    refResult[i].setRank(i);
	    }
	  }
	}
      }

    System.out.println("Reconstructing display structures");
      
    // Reconstruct display structures
    int numRunIds = runIds.length;

    if (resultSetsForDisplay == null || numRunIds != oldNumRunIds) 
      {  
      // Structures don't exist or number of result sets changed
      oldNumRunIds = numRunIds;
      runIdsForDisplay = new String[numRunIds];
      resultSetsForDisplay = new DocData[numRunIds][MAX_RESULT_SIZE];
      TreeMap resultsForCurTopic = 
	  (TreeMap)resultsByTopic.get(topicForDisplay);
      if (resultsForCurTopic == null)
	  {
	      System.out.println("1 No result");
	      return (-1);
	  }
      Set runIdSet = resultsForCurTopic.keySet();
      Iterator iterator = runIdSet.iterator();
      if (iterator == null)
	  {
	      System.out.println("1 No run id iterator");
	      return (-1);   
	  }
      String runId = null;
      runsWithData = 0;
      for (i = 0; i < numRunIds; i++)
	  { 
	      try { 
		  runId = (String)iterator.next();
		  runsWithData++;
		  runIdsForDisplay[i] = runId;
		  resultSetsForDisplay[i] = (DocData[])resultsForCurTopic.get(runId);
	      }
	      catch (java.util.NoSuchElementException e) {
	      }


	  }
      }
    else  // preserve existing order of unchanged number of run-ids
	{
	    System.out.println("preserve existing order of unchanged number of run-ids for topic "+topicForDisplay+"\n");
      TreeMap resultsForCurTopic = 
	(TreeMap)resultsByTopic.get(topicForDisplay);
      if (resultsForCurTopic == null)
	  {
	      System.out.println("2 No result");
	      return (-1);
	  }
      Set runIdSet = resultsForCurTopic.keySet();
      Iterator iterator = runIdSet.iterator();
     if (iterator == null)
	  {
	      System.out.println("2 No run id iterator");
	      return (-1);   
	  }
      String runId = null;
      for (i = 0; i < numRunIds; i++)
	{ 
	    try {
		
		runId = (String)iterator.next();
		for (int j=0; j<runIdsForDisplay.length;j++)
		    {
			if (runIdsForDisplay[j]!= null && runId.compareTo(runIdsForDisplay[j]) == 0)
			    {
				runIdsForDisplay[j] = runId;
				resultSetsForDisplay[j] = 
				    (DocData[])resultsForCurTopic.get(runId);
			    }
		    }
	    }
	    catch (java.util.NoSuchElementException e) {
	    }
	}
      }


    return(0);
  }


 //    W i d g e t s - menu bar items

  /**--------------------------------------------------------------------
   * Creates the menu bar for the BeadPlot application
   * @returns a menu bar
   */
  public JMenuBar createMenuBar () {

    JButton button = null;
    JMenuBar menuBar = null;
    JMenu menu = null;
    JMenuItem menuItem = null;

    // Create a menu bar
    menuBar = new JMenuBar();

    /*-----------------------------*
     * Add "File" menu bar item
     *-----------------------------*/
    menu = new JMenu("File");
    menu.setToolTipText("Load results and qrels files");
    menu.setMnemonic(KeyEvent.VK_F);
    menu.getAccessibleContext().setAccessibleDescription("File");
    menuBar.add(menu);

    // - - Add "Load qrels" menu item
    menuItem = 
      menu.add(new ChooseQrels("Load qrels"));
    menuItem.setAccelerator(KeyStroke.getKeyStroke(
                 KeyEvent.VK_Q, ActionEvent.ALT_MASK));
    menuItem.getAccessibleContext().setAccessibleDescription(
                 "This doesn't really do anything");

    // - - Add "Load result sets" menu item
    menuItem = 
      menu.add(new ChooseResults("Load result sets"));
    menuItem.setAccelerator(KeyStroke.getKeyStroke(
                 KeyEvent.VK_R, ActionEvent.ALT_MASK));
    menuItem.getAccessibleContext().setAccessibleDescription(
                 "This doesn't really do anything");

    menu.addSeparator();

    // - Add "Print" menu item
    menuItem = 
      menu.add(new BeadPlotPrint("Print beadplot"));
    menuItem.setAccelerator(KeyStroke.getKeyStroke(
                 KeyEvent.VK_P, ActionEvent.ALT_MASK));
    menuItem.getAccessibleContext().setAccessibleDescription(
                 "This doesn't really do anything");

    // - - Add "Exit" menu item
    menuItem = menu.add(new BeadPlotExit("Exit BeadPlot"));
    menuItem.setAccelerator(KeyStroke.getKeyStroke(
                 KeyEvent.VK_E, ActionEvent.ALT_MASK));
    menuItem.getAccessibleContext().setAccessibleDescription(
                 "This doesn't really do anything");


   /*-----------------------------*
     * Add "View" menu bar item
     *-----------------------------*/
    menu = new JMenu("View");
    menu.setToolTipText("Change the view of the plot data");
    menu.setMnemonic(KeyEvent.VK_V);
    menu.getAccessibleContext().setAccessibleDescription("View");
    menuBar.add(menu);
    viewMenu = menu;
    viewMenu.setEnabled(false);

    /*-----------------------------*
     * Add "Topic" menu bar item
     *-----------------------------*/
    // - - Add "Choose topic" menu item
    menuItem = 
      menu.add(new ChooseTopic("Change topic"));
    menuItem.setAccelerator(KeyStroke.getKeyStroke(
                 KeyEvent.VK_T, ActionEvent.ALT_MASK));
    menuItem.getAccessibleContext().setAccessibleDescription(
                 "This doesn't really do anything");

    /*-----------------------------*
     * Add "Set display range start" menu bar item
     *-----------------------------*/
    // - - Add "Set display range start" menu item
    menuItem = 
      menu.add(new SetDisplayRangeStart("Change display range"));
    menuItem.setAccelerator(KeyStroke.getKeyStroke(
                 KeyEvent.VK_D, ActionEvent.ALT_MASK));
    menuItem.getAccessibleContext().setAccessibleDescription(
                 "Change display range start");

    /*-----------------------------*
     * Add "Change reference range" submenu
     *-----------------------------*/
    JMenu subMenu = new JMenu("Change reference range");
    menu.add(subMenu);

    /*-----------------------------*
     * Add "Set reference range start" menu bar item
     *-----------------------------*/
    // - - Add "start" menu item
    menuItem = 
      subMenu.add(new SetRefRangeStart("start"));
    menuItem.setAccelerator(KeyStroke.getKeyStroke(
                 KeyEvent.VK_A, ActionEvent.ALT_MASK));
    menuItem.getAccessibleContext().setAccessibleDescription(
                 "Change reference range start");

    /*-----------------------------*
     * Add "Set reference range size" menu bar item
     *-----------------------------*/
    // - - Add "size" menu item
    menuItem = 
      subMenu.add(new SetRefRangeSize("size"));
    menuItem.setAccelerator(KeyStroke.getKeyStroke(
                 KeyEvent.VK_I, ActionEvent.ALT_MASK));
    menuItem.getAccessibleContext().setAccessibleDescription(
                 "Change reference range size");


    /*-----------------------------*
     * Add "Filter by relevance" menu bar item
     *-----------------------------*/
    // - - Add "Filter by relevance" menu item
    menuItem = 
      menu.add(new FilterByRelevance("Change selection by relevance"));
    menuItem.setAccelerator(KeyStroke.getKeyStroke(
                 KeyEvent.VK_S, ActionEvent.ALT_MASK));
    menuItem.getAccessibleContext().setAccessibleDescription(
                 "Change selection by relevance");

 
    /*----------------------------------------------------*
     * Add spacer to right justify "Help" menu bar item
     *----------------------------------------------------*/
    menuBar.add(Box.createHorizontalGlue());

    /*-----------------------------*
     * Add "Help" menu bar item
     *-----------------------------*/
    menu = new JMenu("Help");
    menu.setToolTipText("Get help on how to use BeadPlot");
    menu.setMnemonic(KeyEvent.VK_H);
    menu.getAccessibleContext().setAccessibleDescription("Help");
    menuBar.add(menu);

    // - - Add "Application help" menu item
    menuItem = 
      menu.add(new ProvideApplHelp("Guide to using BeadPlot"));
    menuItem.setAccelerator(KeyStroke.getKeyStroke(
                 KeyEvent.VK_G, ActionEvent.ALT_MASK));
    menuItem.getAccessibleContext().setAccessibleDescription(
                 "This doesn't really do anything");

    // - - Add "About" help menu item
    menuItem = 
      menu.add(new ProvideAboutHelp("About"));
    menuItem.setAccelerator(KeyStroke.getKeyStroke(
                 KeyEvent.VK_A, ActionEvent.ALT_MASK));
    menuItem.getAccessibleContext().setAccessibleDescription(
                 "This doesn't really do anything");

    return menuBar;
  }



  /**--------------------------------------------------------------------
   * Creates the components below the menubar
   */
  public Component createComponents() {
    plot = new Plot();
    plot.setBackground(Color.lightGray);
    JScrollPane scrollPane = new JScrollPane(plot);
    scrollPane.setPreferredSize(new Dimension(PREFERRED_PLOT_WIDTH,600));

    scrollPane.addMouseListener(new MouseAdapter() {
       public void mouseClicked(MouseEvent e) 
	 {
	 int x = e.getX();
	 int y = e.getY();
	 highlightDocData = null;
	 System.out.println("("+x+","+y+")");
	 int resultIndex = (y-BEAD_HEIGHTH+3)/(2*BEAD_HEIGHTH*VGAP);
	 int docIndex = 
	   x/(BEAD_WIDTH+HGAP) - RUN_ID_WIDTH + 1 + MIN_DISPLAY_INDEX;
	 System.out.println("docIndex="+docIndex+" resultIndex="+resultIndex);
	 int modifiers = e.getModifiers();
	 int clicks = e.getClickCount();
	 if (resultSetsForDisplay != null && 
	     resultIndex >= 0 && 
	     resultIndex < runIdsForDisplay.length)
	   { // only interested if over beads area
	   if ((modifiers & InputEvent.BUTTON1_MASK)==InputEvent.BUTTON1_MASK)
	     { // left mouse button pressed
	     if (clicks == 1)
	       {
	       contents.setCursor(waitCursor);
	       if (docIndex < MIN_DISPLAY_INDEX) // pertains to run-id
		 {
		 refRunId = runIdsForDisplay[resultIndex];
		 if (recalculateDisplay() == 0)
		   {
		   f.paintAll(f.getGraphics());
		   }
		 }
	       else                              // pertains to document
		 {
                 System.out.println(resultSetsForDisplay[resultIndex][docIndex].getDocId());
		 highlightDocData = 
		   resultSetsForDisplay[resultIndex][docIndex];
		 f.paintAll(f.getGraphics());
		 }

	       contents.setCursor(defaultCursor);
	       }
	     }
	   if ((modifiers & InputEvent.BUTTON3_MASK)==InputEvent.BUTTON3_MASK)
	     { // right mouse button pressed
	     if (clicks == 1)
	       {
	       contents.setCursor(waitCursor);
	       if (docIndex < MIN_DISPLAY_INDEX) // pertains to run-id
		 {
		 // move bead to bottom and shift others up
		 prioritizeResultSet(resultSetsForDisplay, 
				     runIdsForDisplay, 
				     resultIndex);
		 f.paintAll(f.getGraphics()); 
		 }
	       else              // pertains to document
		 { 
		 // undo document highlighting
		 highlightDocData = null;
		 f.paintAll(f.getGraphics());
		 }
	       contents.setCursor(defaultCursor);
	       }
	     }
	   }
	 }
    });
    return scrollPane;
  } // end createComponents

  

  /**--------------------------------------------------------------------
   * Returns just the class name -- no package info.
   * @param o object whose class name is to returned
   * @return class name string
   */
  protected String getClassName(Object o) {
    String classString = o.getClass().getName();
    int dotIndex = classString.lastIndexOf(".");
    return classString.substring(dotIndex+1);
  }



  //    A c t i o n   c l a s s e s  associated with menu items etc.

  /**--------------------------------------------------------------------
   * Exits BeadPlot application
   */
  public class BeadPlotExit extends AbstractAction {

    public  BeadPlotExit(String description) {
      super(description);
    }

    /**
     * Exits the beadplot application
     * @param event event which triggered this action
     */
    public  void actionPerformed(ActionEvent event) {
      int returnValue 
	= JOptionPane.showConfirmDialog(f, 
					"Do you really wish to exit the BeadPlot application ?", 
					"Exit BeadPlot application?", 
					JOptionPane.YES_NO_OPTION);
      if (returnValue == JOptionPane.YES_OPTION)
	System.exit(0);
    }
  }


  /**--------------------------------------------------------------------
   * Prints beadplot
   */
  public class BeadPlotPrint extends AbstractAction {

    public  BeadPlotPrint(String description) {
      super(description);
    }

    /**
     * Prints the beadplot
     * @param event event which triggered this action
     */
    public  void actionPerformed(ActionEvent event) {
      System.out.println("Printing the beadplot");
    }
  }

  /**--------------------------------------------------------------------
   * Chooses a topic
   */
  public class ChooseTopic extends AbstractAction {

    public  ChooseTopic(String description) {
      super(description);
    }

    /**
     * Prompts user to choose a topic from a list
     * @param event event which triggered this action
     */
    public  void actionPerformed(ActionEvent event) {
      if (topicDialog == null)
	{
	topicDialog.initialize(f,topics,"Choose a topic", 
			       "Topics for which results exist:",
			       ListSelectionModel.SINGLE_SELECTION);
	}

      topicForDisplay = topicDialog.showDialog(f,topicForDisplay)[0];

	int len = topicForDisplay.length();
	if (len == 3)
	    {
		topicForDisplay = "0"+topicForDisplay;
	    }
	else if (len == 2)
	    {
		topicForDisplay = "00"+topicForDisplay;
	    }	
	else if (len == 1)
	    {
		topicForDisplay = "000"+topicForDisplay;
	    }	

      resultSetsForDisplay = null; // set of runs with results for 
                                   // new topic may be different
      if (recalculateDisplay() == 0)
	f.paintAll(f.getGraphics());
    }
  }



  /**--------------------------------------------------------------------
   * Chooses result sets and reads them in
   */
  public class ChooseResults extends AbstractAction {

    ProgressMonitor progressMon = null;
    int progressVal = 0;

    public  ChooseResults(String description) {
      super(description);
    }


    /**
     * Chooses result sets
     * @param event event which triggered this action
     */
    public  void actionPerformed(ActionEvent event) {

      contents.setCursor(waitCursor);

      String selectedValue = (String)JOptionPane.showInputDialog(
              f, 
              "Enter the fully qualified name of the directory\n"+
	      "containing the result sets you want to see",
              "Enter location of results",
	      JOptionPane.QUESTION_MESSAGE);

      if (selectedValue != null)
	{
	resultsDirName = selectedValue;

        File resultsDir = new File(resultsDirName);

        String path = resultsDir.getAbsolutePath() +
	  System.getProperty("file.separator");

	resultFileNames = resultsDir.list();

	if (resultFileNames == null)
	  {
	  // message about no files being found - directory misspelled?
	  }
	else
	  {

	  for (int i=resultFileNames.length-1; i>=0; i--)
	    resultFileNames[i] = path+resultFileNames[i];

	  if (resultFilesDialog == null)
	    {
	    resultFilesDialog.initialize(f,resultFileNames,
				       "Choose result sets", 
				       "Result set files to choose from:",
				       ListSelectionModel.SINGLE_INTERVAL_SELECTION);
	    }

	  resultFileNames = (String[])resultFilesDialog.showDialog(f,null);
	  if (resultFileNames.length > 0)
	    {
	    ResultSetReader resultReader = 
	      new ResultSetReader(resultFileNames);
	    resultReader.start();
	    }
	  }

	}

    }

  }


  /**--------------------------------------------------------------------
   * Chooses qrels
   */
  public class ChooseQrels extends AbstractAction {

    public  ChooseQrels(String description) {
      super(description);
    }

    /**
     * Chooses qrels and read them in
     * @param event event which triggered this action
     */
    public  void actionPerformed(ActionEvent event) {

      contents.setCursor(waitCursor);

      String selectedValue = (String)JOptionPane.showInputDialog(
              f, 
              "Enter the name of the qrels file to use",
              "Enter name of qrels",
	       JOptionPane.QUESTION_MESSAGE);

      if (selectedValue != null)
	{
        qrelsFileName = selectedValue;
	readQrels(qrelsFileName);

	topicForDisplay = topics[0]; // default to first
	if (refRunId != null)
	  {
	  System.out.println("Enabling View");
	  viewMenu.setEnabled(true);
	  }
	if (recalculateDisplay() == 0)
	  f.paintAll(f.getGraphics());
	}

      contents.setCursor(defaultCursor);

    }


    /**
     * Read a qrels file in and stores the contents
     * @param fileName qrels file name string
     */
    public void readQrels(String qrelsFileName) {
      
      BufferedReader reader = null;
      
      try { reader = new BufferedReader(new FileReader(qrelsFileName));}
      catch (FileNotFoundException e) {
      System.out.println("Beadplot.readQrels: Unable to find qrels file -> "
			 + qrelsFileName + "-" +e);
      return; 
      }

      String line = null;
      StringTokenizer tokenizer = null;

      String topic = null;
      String junk  = null;
      String docid = null;
      String judgement = null;

      try { line = reader.readLine();}
      catch (FileNotFoundException e) {
      System.out.println("Beadplot.readQrels: Unable to read qrels file -> "
			 + qrelsFileName + "-" +e);
      return; 
      }
      catch (IOException e) {
      System.out.println("Beadplot.readQrels: Unable to read qrels file -> "
			 + qrelsFileName+ "-" +e);
      return; 
      }

      while (line != null)
	{

	tokenizer =  new StringTokenizer(line);

	while (tokenizer.hasMoreTokens())
	  {
	  topic = tokenizer.nextToken();
	  junk  = tokenizer.nextToken();
	  docid = tokenizer.nextToken();
	  judgement  = tokenizer.nextToken();
	  qrelsTopics.add(topic);

	  if (judgement.compareTo("1") == 0)
	    qrelsRelsHash.add(topic+docid);	
	
	  }

	try { line = reader.readLine();}
	catch (FileNotFoundException e) 
	  {
	  System.out.println("Beadplot.readQrels: Unable to "+
			     "read qrels file -> " +
			     qrelsFileName + "-" +e);
	  return; 
	  }
	catch (IOException e) 
	  {
	  System.out.println("Beadplot.readQrels: Unable to "+
			     "read qrels file -> " +
			     qrelsFileName+ "-" +e);
	  return; 
	  }

	} // end while (line != null)

      Iterator iterator = qrelsTopics.iterator();
      int numTopics = qrelsTopics.size();
      topics = new String[numTopics];
      int len = 0;
      for (int i = 0; i < numTopics; i++)
        { 
	    topics[i] = (String)iterator.next();
	    len = topics[i].length();
	    if (len == 3)
		{
		    topics[i] = "0"+topics[i];
		}
	    else if (len == 2)
		{
		    topics[i] = "00"+topics[i];
		}	
	    else if (len == 1)
		{
		    topics[i] = "000"+topics[i];
		}	
	}
      
    }
  }



  /**--------------------------------------------------------------------
   * Filters by relevance
   */
  public class FilterByRelevance extends AbstractAction {

    public   FilterByRelevance(String description) {
      super(description);
    }

    /**
     * Filters by relevance
     * @param event event which triggered this action
     */
    public  void actionPerformed(ActionEvent event) {
      System.out.println("Filtering by relevance");
      String[] possibleValues = { "All", 
				  "Relevant", 
				  "Non-relevant" };
      int numPossibleValues = possibleValues.length;
      String initialValue = null;
      if (filteringByRelevance)
	{
	if (requiredRelevance == true)
	  initialValue = possibleValues[1];
        else
	  initialValue = possibleValues[2];
	}
      else
	initialValue = possibleValues[0];

      String selectedValue = (String)JOptionPane.showInputDialog(f, 
              "Choose one", "Filter by documents by relevance?",
              JOptionPane.QUESTION_MESSAGE, null,
              possibleValues, initialValue);

      if (selectedValue != null)
	{
	filterStatus = selectedValue;

	if (selectedValue.compareTo(possibleValues[0]) == 0)
	  filteringByRelevance = false;
	else if (selectedValue.compareTo(possibleValues[1]) == 0)
	  {
	  filteringByRelevance = true;
	  requiredRelevance = true;
	  }
	else if (selectedValue.compareTo(possibleValues[2]) == 0)
	  {
	  filteringByRelevance = true;
	  requiredRelevance = false;
	  }
	if (recalculateDisplay() == 0)
	  {
	  f.paintAll(f.getGraphics());
	  }
	}
    }
  }




  /**--------------------------------------------------------------------
   * Set display range start
   */
  public class SetDisplayRangeStart extends AbstractAction {

    public   SetDisplayRangeStart(String description) {
      super(description);
    }


    /**
     * Sets the display range start (lower bound)
     * @param event event which triggered this action
     */
    public  void actionPerformed(ActionEvent event) {
     int limit = (MAX_RESULT_SIZE-NUM_DISPLAYED_RANKS)/10;
     Integer [] possibleValues = new Integer[limit+1];
     for (int i=0; i<=limit; i++)
       possibleValues[i]=new Integer(i*10+1);
     Integer newSelectedDisplayRangeStartValue
       = (Integer)JOptionPane.showInputDialog(f, 
	      "Set the rank of the\nhighest ranked document\n"+
	      "to be displayed.\nSize is fixed at 100 documents",
	      "Set display range start",
              JOptionPane.QUESTION_MESSAGE, null,
              possibleValues, selectedDisplayRangeStartValue);

 
      if (newSelectedDisplayRangeStartValue != null)
	{
	MIN_DISPLAY_INDEX = newSelectedDisplayRangeStartValue.intValue()-1;
	selectedDisplayRangeStartValue = newSelectedDisplayRangeStartValue;
      	f.paintAll(f.getGraphics());
	}
      
    }
  }


  /**--------------------------------------------------------------------
   * Set reference range start
   */
  public class SetRefRangeStart extends AbstractAction {

    public   SetRefRangeStart(String description) {
      super(description);
    }

    /**
     * Sets the reference range start (lower bound)
     * @param event event which triggered this action
     */
    public  void actionPerformed(ActionEvent event) {
     int limit = (MAX_RESULT_SIZE - selectedRefRangeSizeValue.intValue())/10;
     Integer [] possibleValues = new Integer[limit+1];
     for (int i=0; i<=limit; i++)
       possibleValues[i]=new Integer(i*10+1);
     Integer newSelectedRefRangeStartValue
       = (Integer)JOptionPane.showInputDialog(f, 
              "Set the rank of the\nhighest ranked document\n"+
	      "in the reference range\n(Range size is "+
              selectedRefRangeSizeValue.intValue()+" )",
              "Set reference range start",
              JOptionPane.QUESTION_MESSAGE, null,
              possibleValues, selectedRefRangeStartValue);

 
      if (newSelectedRefRangeStartValue != null)
	{
	selectedRefRangeStartValue = newSelectedRefRangeStartValue;
	MIN_REF_RANK = selectedRefRangeStartValue.intValue();
	MAX_REF_RANK = MIN_REF_RANK + selectedRefRangeSizeValue.intValue()-1;
	if (recalculateDisplay() == 0)
	  f.paintAll(f.getGraphics());
	}
      
    }
  }

  /**--------------------------------------------------------------------
   * Set reference range size
   */
  public class SetRefRangeSize extends AbstractAction {

    public   SetRefRangeSize(String description) {
      super(description);
    }


    /**
     * Sets the reference range size
     * @param event event which triggered this action
     */
    public  void actionPerformed(ActionEvent event) {
     int choices = (MAX_RESULT_SIZE - selectedRefRangeStartValue.intValue() +1)/10;
     Integer [] possibleValues = new Integer[choices];
     for (int i=1; i<=choices; i++)
       possibleValues[i-1]=new Integer(i*10);
     Integer newSelectedRefRangeSizeValue
       = (Integer)JOptionPane.showInputDialog(f, 
	      "Set the number of documents\nin the reference range\n"+
	      "(Range starts at rank "+ 
	      selectedRefRangeStartValue.intValue()+ " )",
              "Set reference range size", 
              JOptionPane.QUESTION_MESSAGE, null,
              possibleValues, selectedRefRangeSizeValue);

 
      if (newSelectedRefRangeSizeValue != null)
	{
	selectedRefRangeSizeValue = newSelectedRefRangeSizeValue;
	MIN_REF_RANK = selectedRefRangeStartValue.intValue();
	MAX_REF_RANK = MIN_REF_RANK + selectedRefRangeSizeValue.intValue()-1;
	System.out.println("MIN_REF_RANK="+MIN_REF_RANK+"  MAX_REF_RANK="+MAX_REF_RANK);
	if (recalculateDisplay() == 0)
	  f.paintAll(f.getGraphics());
	}
      
    }
  }



  /**--------------------------------------------------------------------
   * Provides "about" help
   */
  public class ProvideAboutHelp extends AbstractAction {

    public   ProvideAboutHelp(String description) {
      super(description);
    }

    /**
     * Provides "about" help
     * @param event event which triggered this action
     */
    public  void actionPerformed(ActionEvent event) {
      System.out.println("Providing 'About' help");
      JOptionPane.showMessageDialog
	(f,
         "BeadPlot was developed by the NLP/IR group at the" + 
         "\nNational Institut of Standards and Technology, a US" + 
         "\ngovernment agency, and so is not subject to copyright"+ 
         "\nwithin the US.  See www-nlpir.nist.gov/projects/beadplot"+
	 "\nfor more information",
	 "About BeadPlot",
	 JOptionPane.INFORMATION_MESSAGE);
    }
  }



  /**--------------------------------------------------------------------
   * Provides application help
   */
  public class ProvideApplHelp extends AbstractAction {

    public   ProvideApplHelp(String description) {
      super(description);
    }

    /**
     * Provides help
     * @param event event which triggered this action
     */
    public  void actionPerformed(ActionEvent event) {
      System.out.println("Providing BeadPlot application help");
      JOptionPane.showMessageDialog
	(f,
    "1) Click on the 'File' menubar item and a menu will appear.\n\n"+
    "2) Load qrels and result sets by clicking on the relevant menu\n"+ 
    "items and following the directions. You can add more result sets\n"+
    "later by the same process.\n\n"+

    "Once both qrels and some result sets have been loaded, an initial\n"+
    "beadplot will appear. The topic, for which results are displayed,\n"+
    "appears at the top in the window frame. Every result set is re-\n"+
    "presented by a line containing its run-id on the left, followed\n"+
    "by a sequence of rectangles each representing a document, with the\n"+
    "highest ranked document leftmost.\n\n"+

    "One of the results sets, the reference result, is special. The\n"+
    "plot only shows documents which appear in the reference set. Its\n"+
    "run-id appears in blue. Each of its documents within a given\n"+
    "range (the reference range) is assigned a spectral color.  A\n"+
    "given document always has the same color no matter where on the\n"+
    "plot it appears: a spectral color if it (also) occurs in the\n"+
    "reference range, otherwise gray.\n\n"+

    "3) Here's how you can modify the plot:\n" +
    " Use the items under the View menu to...                         \n" +
    " - change the topic                                              \n" +
    " - look at a different subset of the result sets                 \n" +
    " - move the starting rank of the reference range                 \n" +
    " - make the reference range larger/smaller                       \n" +
    " - see only (non)relevant documents                            \n\n" +
    " Or use your mouse to...                                         \n" +
    " - pick a different reference result                             \n" +
    "                                     (left click on the run-id)  \n" +
    " - move a result to the bottom                                   \n" +
    "                                     (right click on the run-id) \n" +
    " - highlight a document everywhere it appears                    \n" +
    "                                     (left click on a doc's bead)\n" +
    " - undo the document highlighting                                \n"+ 
    "                                     (right click on any bead)   \n", 
    "About BeadPlot",
	 JOptionPane.INFORMATION_MESSAGE);
    }
  }




  /*---------------------------------------------------------------------
   * The BeadPlot application main method
   * @param s IGNORED
   */
  public static void main(String s[]) {

    try {
      UIManager.setLookAndFeel(UIManager.getCrossPlatformLookAndFeelClassName());
    } catch (Exception e) { }

    BeadPlot bP = new BeadPlot();
    f = bP; // clean up - dont need both variables

    Container contentPane = bP.getContentPane();

    // Create the menus and add
    JMenuBar menuBar = bP.createMenuBar();
    bP.setJMenuBar(menuBar);

    // Create the contents below the menubar and add
    contents = bP.createComponents();
    contentPane.add(contents);

    bP.addWindowListener(new WindowAdapter() {
      public void windowClosing(WindowEvent e) 
	{System.exit(0);}
    });
   
    bP.pack();
    bP.setVisible(true);

  } // end main


} // end BeadPlot